Why has Trump been so desperate to protect Flynn?

And so the special counsel’s probe inches ever closer to the White House, and President Trump.

It is not possible for those on the outside to know just how close. But the move by former National Security Adviser Michael Flynn to plead guilty to lying to the FBI is an ominous sign for Trump and his circle. We knew this day was coming, and yet the news that Flynn is cooperating with Special Counsel Robert S. Mueller III feels earth-shaking, for good reason. It may be the moment that everything changed.

Do not believe White House spin to the contrary. A few weeks ago, after the indictment of Paul Manafort, Trump’s former campaign chairman, the White House had an easier time of it. “Sorry, but this is years ago, before Paul Manafort was part of the Trump campaign,” the president tweeted.

The guilty plea by former foreign policy adviser George Papadopoulos posed a bit more of a challenge, what with the fact that he admitted lying to the FBI about his dealings with Russia during the campaign, and had informed campaign officials about some of those contacts. But still Trump could argue, with some basis, that “few people knew the young, low level volunteer named George.”

Not so, with Flynn. The White House tried gamely to make it look as if there was nothing new to see here, and that Flynn had been charged only with doing what had already precipitated his firing by the Trump White House.

“Nothing about the guilty plea or the charge implicates anyone other than Mr. Flynn,” White House lawyer Ty Cobb said. That is untrue. The plea documents make clear not only that Flynn lied, but that he lied with the full knowledge of senior Trump officials, who allowed his misstatements to stand unchallenged.

Oh, and by the way, nice try on portraying Flynn as a “former Obama administration official,” given that the Obama administration fired Flynn as Defense Intelligence Agency director, and that the Trump administration dawdled in acting on Flynn for 18 days after then-acting Attorney General Sally Yates warned officials that Flynn was lying about his phone calls with Russian Ambassador Sergey Kislyak during the transition.

As much as the White House wants us to think of Flynn as a rogue freelancer, and itself as the victim, the court papers indicate that Flynn was not acting alone in his dealings with Kislyak. To use the most loaded of words, he was colluding with others in the Trump transition.

According to the documents, Flynn was phoning back and forth with the Trump transition team at Mar-a-Lago. Flynn asked an unnamed “senior official” what to tell Kislyak; reported back to the senior official after the phone call; and when Kislyak informed Flynn that Russia would not retaliate, informed “senior members of the Presidential Transition Team” about the conversation.

Even more tantalizing, as the United Nations prepared to vote on a Security Council resolution on Israeli settlements, “a very senior member of the Presidential Transition Team” ... “directed Flynn to contact officials from foreign governments, including Russia” to press them to oppose the resolution.

And that gets to the biggest unanswered question about Flynn: Why has Trump, a man for whom loyalty is a distinctly one-way street, been so desperate to protect him? “I hope you can see your way clear to letting this go, to letting Flynn go,” Trump urged James Comey last February, a few months before firing the FBI director. “He is a good guy.”

A good guy — or, from Trump’s perspective, a very dangerous one. With Friday’s events, the latter seems far more likely.